Download:	ProkaryMetrics v0.3.1
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Citing ProkaryMetrics [pdf]:

Shareef M. Dabdoub, Brian A. VanderBrink, Sheryl S. Justice, and William C. Ray. "Quantitating pathogenic biofilm architecture in biopsied tissue". In Proceedings of the IEEE Visualization 2011 Workshop on Visual Analytics in Healthcare. October 2011.